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Yes, if you have Windows 2000, XP, 2003 or Vista, Spybot-S&D; does allow you to scan inactive Windows versions as well, including the registry of other installations!
To scan your system including installations on other partitions, right-click the link/icon you use to start Spybot-S&D;, and add /allhives to the command line (separated by a space from the rest). If you now start Spybot-S&D; through this link, it will automatically detect other installations, and scan theirs registries and files as well.
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