Calling C functions
This tutorial describes shortly what you need to know in order to call C library functions from Cython code. For a longer and more comprehensive tutorial about using external C libraries, wrapping them and handling errors, see Using C libraries.
For simplicity, let’s start with a function from the standard C library. This does not add any dependencies to your code, and it has the additional advantage that Cython already defines many such functions for you. So you can just cimport and use them.
For example, let’s say you need a low-level way to parse a number from a char* value. You could use the atoi() function, as defined by the stdlib.h header file. This can be done as follows:
from libc.stdlib cimport atoi
cdef parse_charptr_to_py_int(char* s):
assert s is not NULL, "byte string value is NULL"
return atoi(s) # note: atoi() has no error detection!
You can find a complete list of these standard cimport files in Cython’s source package Cython/Includes/. It also has a complete set of declarations for CPython’s C-API. For example, to test at C compilation time which CPython version your code is being compiled with, you can do this:
from cpython.version cimport PY_VERSION_HEX
print PY_VERSION_HEX >= 0x030200F0 # Python version >= 3.2 final
Cython also provides declarations for the C math library:
from libc.math cimport sin
cdef double f(double x):
return sin(x*x)
Dynamic linking
The libc math library is special in that it is not linked by default on some Unix-like systems, such as Linux. In addition to cimporting the declarations, you must configure your build system to link against the shared library m. For distutils, it is enough to add it to the libraries parameter of the Extension() setup:
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
ext_modules=[
Extension("demo",
["demo.pyx"],
libraries=["m"]) # Unix-like specific
]
setup(
name = "Demos",
cmdclass = {"build_ext": build_ext},
ext_modules = ext_modules
)
External declarations
If you want to access C code for which Cython does not provide a ready to use declaration, you must declare them yourself. For example, the above sin() function is defined as follows:
cdef extern from "math.h":
double sin(double x)
This declares the sin() function in a way that makes it available to Cython code and instructs Cython to generate C code that includes the math.h header file. The C compiler will see the original declaration in math.h at compile time, but Cython does not parse “math.h” and requires a separate definition.
Just like the sin() function from the math library, it is possible to declare and call into any C library as long as the module that Cython generates is properly linked against the shared or static library.
Naming parameters
Both C and Cython support signature declarations without parameter names like this:
cdef extern from "string.h":
char* strstr(const char*, const char*)
However, this prevents Cython code from calling it with keyword arguments (supported since Cython 0.19). It is therefore preferable to write the declaration like this instead:
cdef extern from "string.h":
char* strstr(const char *haystack, const char *needle)
You can now make it clear which of the two arguments does what in your call, thus avoiding any ambiguities and often making your code more readable:
cdef char* data = "hfvcakdfagbcffvschvxcdfgccbcfhvgcsnfxjh"
pos = strstr(needle='akd', haystack=data)
print pos != NULL
Note that changing existing parameter names later is a backwards incompatible API modification, just as for Python code. Thus, if you provide your own declarations for external C or C++ functions, it is usually worth the additional bit of effort to choose the names of their arguments well.