The Compare .NET Objects Library has the ability to do different configurations. 

Default Configuration

CompareLogic logic = new CompareLogic();

logic.Config.MaxDifferences = 100;

Pass in the Configuration

ComparisonConfig config = new ComparisonConfig();

config.MaxDifferences = 100;

CompareLogic logic = new CompareLogic(config);

Application Settings Configuration

Edit the resource file for the application settings